Publications

*Data sets available on request. 

 


 2018


Belamkar, V., Guttieri, M. J., Hussain, W., Jarquín, D., El-Basyoni, I., Poland, J., Lorenz, A. J., & Baenziger, P. S. (2018). Genomic Selection in Preliminary Yield Trials in a Winter Wheat Breeding Program. G3 (Bethesda, Md.), g3.200415.2018. https://doi.org/10.1534/g3.118.200415


Brunazzi, A., Scaglione, D., Talini, R. F., Miculan, M., Magni, F., Poland, J., Enrico Pè, M., Brandolini, A., & Dell’Acqua, M. (2018). Molecular diversity and landscape genomics of the crop wild relative Triticum urartu across the Fertile Crescent. The Plant Journal, 94(4), 670–684. https://doi.org/10.1111/tpj.13888


Danilova, T. V., Friebe, B., Gill, B. S., Poland, J., & Jackson, E. (2018). Development of a complete set of wheat–barley group-7 Robertsonian translocation chromosomes conferring an increased content of β-glucan. Theoretical and Applied Genetics, 131(2), 377–388. https://doi.org/10.1007/s00122-017-3008-z


DeHaan, L., Christians, M., Crain, J., & Poland, J. (2018). Development and Evolution of an Intermediate Wheatgrass Domestication Program. Sustainability, 10(5), 1499. https://doi.org/10.3390/su10051499


Eltaher, S., Sallam, A., Belamkar, V., Emara, H. A., Nower, A. A., Salem, K. F. M., Poland, J., & Baenziger, P. S. (2018). Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing. Frontiers in Genetics, 9, 76. https://doi.org/10.3389/fgene.2018.00076


Hussain, W., Guttieri, M. J., Belamkar, V., Poland, J., Sallam, A., & Baenziger, P. S. (2018). Registration of a Bread Wheat Recombinant Inbred Line Mapping Population Derived from a Cross Between ‘Harry’ and ‘Wesley.’ Journal of Plant Registrations, 0(0), 0. https://doi.org/10.3198/jpr2017.11.0085crmp


Juliana, P., Singh, R. P., Singh, P. K., Poland, J. A., Bergstrom, G. C., Huerta espino, J., Bhavani, S., Crossa, J., & Sorrells, M. E. (2018). Genome wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes. Theoretical and Applied Genetics, 131, 1405–1422. https://doi.org/10.1007/s00122-018-3086-6


Mourad, A. M. I., Sallam, A., Belamkar, V., Wegulo, S., Bowden, R., Jin, Y., Mahdy, E., Bakheit, B., El-Wafaa, A. A., Poland, J., & Baenziger, P. S. (2018). Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat. Frontiers in Plant Science, 9, 380. https://doi.org/10.3389/fpls.2018.00380


Shao, M., Bai, G., Rife, T. W., Poland, J., Lin, M., Liu, S., Chen, H., Kumssa, T., Fritz, A., Trick, H., Li, Y., & Zhang, G. (2018). QTL mapping of pre-harvest sprouting resistance in a white wheat cultivar Danby. Theoretical and Applied Genetics, 1–15. https://doi.org/10.1007/s00122-018-3107-5


Wang, X., Singh, D., Marla, S., Morris, G., & Poland, J. (2018). Field-based high-throughput phenotyping of plant height in sorghum using different sensing technologies. Plant Methods, 14(1), 53. https://doi.org/10.1186/s13007-018-0324-5 


Arora, S., Steuernagel, B., Chandramohan, S., Long, Y., Matny, O., Johnson, R., Enk, J., Periyannan, S., Hatta, M. A. M., Athiyannan, N., Cheema, J., Yu, G., Kangara, N., Ghosh, S., Szabo, L. J., Poland, J., Bariana, H., Jones, J. D. G., Bentley, A. R., Ayliffe, M., Olson, E., Xu, S. S., Steffenson, B. J., Lagudah, E., & Wulff, B. B. H. (2018). Resistance gene discovery and cloning by sequence capture and association genetics. bioRxiv, 248146. https://doi.org/10.1101/248146


Crain, J., Mondal, S., Rutkoski, J., Singh, R. P., & Poland, J. (2018). Combining High-Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding. The Plant Genome, 11(1), 0. https://doi.org/10.3835/plantgenome2017.05.0043


Danilova, T. V, Friebe, B., Gill, B. S., Poland, J., & Jackson, E. (2018). Chromosome Rearrangements Caused by Double Monosomy in Wheat-Barley Group-7 Substitution Lines. Cytogenetic and Genome Research, (0). https://doi.org/10.1159/000487183


Elbasyoni, I., Lorenz, A. J., Guttieri, M., Frels, K., Baenziger, P. S., Poland, J., & Akhunov, E. (2018). A Comparison Between Genotyping-by-sequencing and Array-based Scoring of SNPs for Genomic Prediction Accuracy in Winter Wheat. Plant Science. https://doi.org/10.1016/J.PLANTSCI.2018.02.019


Eltaher, S., Sallam, A., Belamkar, V., Emara, H. A., Nower, A. A., Salem, K. F. M., Poland, J., & Baenziger, P. S. (2018). Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing. Frontiers in Genetics, 9, 76. https://doi.org/10.3389/fgene.2018.00076


Wiersma, A. T., Whetten, R. B., Zhang, G., Sehgal, S. K., Kolb, F. L., Poland, J. A., Mason, R. E., Carter, A. H., Cowger, C., & Olson, E. L. (2018). Registration of Two Wheat Germplasm Lines Fixed for Journal of Plant Registrations, 0(0), 0. https://doi.org/10.3198/jpr2017.06.0036crg

 

 2017


Zhang, X., Larson, S. R., Gao, L., Teh, S. L., DeHaan, L. R., Fraser, M., Sallam, A., Kantarski, T., Frels, K., Poland, J., Wyse, D., & Anderson, J. A. (2017). Uncovering the Genetic Architecture of Seed Weight and Size in Intermediate Wheatgrass through Linkage and Association Mapping. The Plant Genome. doi:10.3835/plantgenome2017.03.0022


Mideros, S., Chung, C., Wiesner-Hanks, T., Poland, J. Wu, D., Fialko, A., Turgeon, B., & Nelson, R. (2017). Determinants of Virulence and In-Vitro Development Colocalize on a Genetic Map 2 of Setosphaeria turcica. Phytopathology. https://doi.org/10.1094/PHYTO-01-17-0021-R


Crain, J., Reynolds, M., & Poland, J. (2017). Utilizing High-Throughput Phenotypic Data for Improved Phenotypic Selection of Stress-Adaptive Traits in Wheat. Crop Science, 57(2), 648–659. https://doi.org/10.2135/cropsci2016.02.0135


Beier, S., Himmelbach, A., Colmsee, C., Zhang, X.-Q., Barrero, R. A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G. J., Kersey, P., Clark, M. D., Caccamo, M., Schulman, A. H., Platzer, M., Close, T. J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N., & Mascher, M. (2017). Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4(170044). https://doi.org/10.1038/sdata.2017.44


Lado, B., Battenfield, S., Guzmán, C., Quincke, M., Singh, R. P., Dreisigacker, S., Peña, R. J., Fritz, A., Silva, P., Poland, J., & Gutiérrez, L. (2017). Strategies for Selecting Crosses Using Genomic Prediction in Two Wheat Breeding Programs. The Plant Genome, 10(2), 0. https://doi.org/10.3835/plantgenome2016.12.0128


Haghighattalab, A., Crain, J., Mondal, S., Rutkoski, J., Singh, R. P., & Poland, J. (2017). Application of geographically weighted regression to improve grain yield prediction from unmanned aerial system imagery. Crop Science. https://doi.org/10.2135/cropsci2016.12.1016


Jarquín, D., Lemes da Silva, C., Gaynor, R. C., Poland, J., Fritz, A., Howard, R., Battenfield, S., & Crossa, J. (2017). Increasing genomic-enabled prediction accuracy by modeling genotype × environment interactions in Kansas wheat. The Plant Genome. https://doi.org/10.3835/plantgenome2016.12.0130


Pérez-Arora, S., Singh, N., Kaur, S., Bains, N. S., Uauy, C., Poland, J., & Chhuneja, P. (2017). Genome-Wide Association Study of Grain Architecture in Wild Wheat Aegilops tauschii. Frontiers in Plant Science, 8(886). https://doi.org/10.3389/fpls.2017.00886


Pérez-Rodríguez, P., Crossa, J., Rutkoski, J., Poland, J., Singh, R., Legarra, A., Autrique, E., Campos, G. de los, Burgueño, J., & Dreisigacker, S. (2017). Single-step genomic and pedigree genotype × environment interaction models for predicting wheat lines in international environments. The Plant Genome. DOI:10.3835/plantgenome2016.09.0089


Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S. O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P. E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X.-Q., Zhang, Q., Barrero, R. A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G. J., Clark, M. D., Caccamo, M., Schulman, A. H., Mayer, K. F. X., Platzer, M., Close, T. J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R., & Stein, N. (2017). A chromosome conformation capture ordered sequence of the barley genomeNature, 544(7651), 427–433. DOI:10.1038/nature22043


Sun, J. Rutkoski, J., Poland, J., Crossa, J., Jannink, J., and Sorrels, M. (2017). Multitrait, random regression, or simple repeatability model in high-throughput phenotyping data improve genomic prediction for wheat grain yeild. The Plant Genome, 10(2). DOI:10.3835/plantgenome2016.11.0111


Moore, J., Manmathan, H., Anderson, V., Poland, J., Morris, C. and Haley, S. (2017). Improving genomic prediction for pre-harvest sprouting tolerance in wheat by weighting large-effect quantitative trait loci. Crop Science, 57, 1-10.  DOI:10.2135/cropsci2016.06.0453


Juliana, P., Singh, R., Singh, P., Crossa, J., Rutkoski, J., Poland, J., Bergstrom, G. and Sorrells, M. (2017). Comparison of models and whole-genome profiling approaches for genomic-enabled prediction of septoria tritici blotch, stagonospora nodorum blotch, and tan spot resistance in wheatThe Plant Genome, 10(2).  DOI:10.3835/plantgenome2016.08.0082 


Juliana, P., Singh, R., Singh, P., Crossa, J., Huerta-Espino, J., Lan, C., Bhavani, S., Rutkoski, J., Poland, J., Bergsrom, G. and Sorrells, M. (2017). Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat. Theoretial and Applied Genetics. DOI:10.1007/s00122-017-2897-1


Dunckel, S., J. Crossa, S. Wu, D. Bonnett, and Poland, J. (2017). Genomic selection for increased yield in synthetic-derived wheat. Crop Science, 57, 713-725. DOI:10.2135/cropsci2016.04.0209


Tanger, P., Klassen, S., Mojica, J. P., Lovell, J. T., Moyers, B. T., Baraoidan, M., Naredo, M., McNally, K., Poland, J., Bush, D. and McKay, J. K. (2017). Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. Scientific Reports. http://doi.org/10.1038/srep42839 


Kantarski, T., Larson, S., Zhang, X., DeHaan, L., Borevitz, J., Anderson, J. and Poland, J. (2017). Development of the first consensus genetic map of intermediate wheatgrass gives insight into the genome and tools for molecular breeding.  Theoretical Applied Genetics, 130(137). DOI:10.1007/s00122-016-2799-7

 


 2016


Tack, J., Barkley, A., Rife, T. W., Poland, J. A., & Nalley, L. L. (2016). Quantifying variety-specific heat resistance and the potential for adaptation to climate change. Global Change Biology, 22(8), 2904–2912. https://doi.org/10.1111/gcb.13163


Wang, X., Thorp, K. R., White, J. W., French, A. N., & Poland, J. A. (2016). Approaches for geospatial processing of field-based high-throughput plant phenomics data from ground vehicle platforms. Transactions of the ASABE, 59(5), 1053–1067. https://doi.org/10.13031/trans.59.11502


Barker, J., Zhang, N., Sharon, J., Steeves, R., Wang, X., Wei, Y., & Poland, J. (2016). Development of a field-based high-throughput mobile phenotyping platform. Computers and Electronics in Agriculture, 122, 74–85. https://doi.org/10.1016/j.compag.2016.01.017


Battenfield, S. D., Guzmán, C., Gaynor, R. C., Singh, R. P., Peña, R. J., Dreisigacker, S., Allan, F. K., & Poland, J. A. (2016). Genomic selection for processing and end-use quality traits in the CIMMYT spring bread wheat breeding program. The Plant Genome, 9 (2). http://doi.org/10.3835/plantgenome2016.01.0005


Chaffin, A. S., Huang, Y.-F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., Foresman, B. J., Blanchard, S. G., Jay, J. J., Reid, R. W., Wight, C. P., Chao, S., Oliver, R., Islamovic, E., Kolb, F. L., McCartney, C., Mitchell Fetch, J. W., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Langdon, T., Howarth, C. J., Brouwer, C. R., Jellen, E. N., Klos, K. E., Poland, J. A., Hsieh, T.-F., Brown, R., Jackson, E., Schlueter, J. A., & Tinker, N. A. (2016). A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial subgenome rearrangement. The Plant Genome, 9 (2). http://doi.org/10.3835/plantgenome2015.10.0102


Crain, J. L., Wei, Y., Barker, J., Thompson, S. M., Alderman, P. D., Reynolds, M., Zhang, N., & Poland, J. (2016). Development and deployment of a portable field phenotyping platform. Crop Science, 56 (3), 965. http://doi.org/10.2135/cropsci2015.05.0290


Haghighattalab, A., González Pérez, L., Mondal, S., Singh, D., Schinstock, D., Rutkoski, J., Ortiz-Monasterio, I., Singh, R. P., Goodin, D. & Poland, J. (2016). Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries. Plant Methods, 12 (1), 35. http://doi.org/10.1186/s13007-016-0134-6


Pauli, D., Chapman, S., Bart, R., Topp, C., Lawrence-Dill, C., Poland, J., & Gore, M. (2016). The quest for understanding phenotypic variation via integrated approaches in the field environment. Plant Physiology, 172 (2). http:/​/​dx.​doi.​org/​10.​1104/​pp.​16.​00592


Poland, J., & Rutkoski, J. (2016). Advances and challenges in genomic selection for disease resistance. Annual Review of Phytopathology, 54 (1), 79–98. http://doi.org/10.1146/annurev-phyto-080615-100056


Rutkoski, J., Poland, J., Mondal, S., Autrique, E., Gonzalez Parez, L., Crossa, J., Reynolds, M. &  Singh, R. (2016). Canopy temperature and vegetation indices from high-throughput phenotyping improve accuracy of pedigree and genomic selection for grain yield in wheat. G3: Genes, Genomes, Genetics, 6 (9). http://doi.org/10.1534/g3.116.032888


Wiersma, A. T., Brown, L. K., Brisco, E. I., Liu, T. L., Childs, K. L., Poland, J. A., Sehgal, S. K. & Olson, E. L. (2016). Fine mapping of the stem rust resistance gene SrTA10187. Theoretical and Applied Genetics, 1 (10). http://doi.org/10.1007/s00122-016-2776-1


Guzman, C., Peña, R. J., Singh, R., Autrique, E., Dreisigacker, S., Crossa, J., Rutkoski, J., Poland, J., & Battenfield, S. (2016). Wheat quality improvement at CIMMYT and the use of genomic selection on it. Applied & Translational Genomics, http://dx.doi.org/10.1016/j.atg.2016.10.004


Kantarski, T., Larson, S., Zhang, X., DeHaan, L., Borevitz, J., Anderson, J., & Poland, J. (2016). Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing. Theoretical and Applied Genetics, 1 (14). DOI: 10.1007/s00122-016-2799-7


Xiao, X., Ohm, H. W., Hunt, G. J., Poland, J. A., Kong, L., Nemacheck, J. A., & Williams, C. E. (2016). Genotyping-by-sequencing to remap QTL for type II Fusarium head blight and leaf rust resistance in a wheat–tall wheatgrass introgression recombinant inbred population. Molecular Breeding, 36(4), 51. DOI:10.1007/s11032-016-0472-0


McCallum, S., Graham, J., Jorgensen, L., Rowland, L. J., Bassil, N. V., Hancock, J. F., Wheeler, E. J., Vining, K., Poland, J. A., Olmstead, J. W., Buck, E., Wiedow, C., Jackson, E., Brown, A., & Hackett, C. A. (2016). Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding, 36(4), 41. DOI:10.1007/s11032-016-0443-5


Tiwari, V. K., Heesacker, A., Riera-Lizarazu, O., Gunn, H., Wang, S., Wang, Y., Gu, Y. Q., Paux, E., Koo, D.-H., Kumar, A., Luo, M.-C., Lazo, G., Zemetra, R., Akhunov, E., Friebe, B., Poland, J., Gill, B. S., Kianian, S., & Leonard, J. M. ((2016). A whole-genome, radiation hybrid mapping resource of hexaploid wheat. The Plant Journal, 86(2), 195-207. DOI:http://doi.org/10.1111/tpj.13153


Zhang, X., Sallam, A., Gao, L., Kantarski, T., Poland, J., DeHaan, L. R., Wyse, D. L., & Anderson, J. A. (2016). Establishment and optimization of genomic selection to accelerate the domestication and improvement of intermediate wheatgrass. The Plant Genome, 9(1), 0. DOI:http://doi.org/10.3835/plantgenome2015.07.0059


Sun, J., Ohm, H. W., Poland, J. A., & Williams, C. E. (2016). Mapping four quantitative trait loci associated with type I fusarium head blight resistance in winter wheat “INW0412.” Crop Science, 56(3), 1163-1172. DOI: http://doi.org/10.2135/cropsci2015.06.0390


DeHaan, L. R., Van Tassel, D. L., Anderson, J. A., Asselin, S. R., Barnes, R., Baute, G. J., Cattani, D. J., Culman, S. W., Dorn, K. M., Hulke, B. S., Kantar, M., Larson, S., Marks, M. D., Miller, A. J., Poland, J., Ravetta, D. A., Rude, E., Ryan, M. R., Wyse, D., & Zhang, X. (2015). A pipeline strategy for grain crop domestication. Crop Science, 56(3),917-930, 10.2135/cropsci2015.06.0356. DOI:http://doi.org/10.2135/cropsci2015.06.0356

 


 2015


Dunckel, S. M., Olson, E. L., Rouse, M. N., Bowden, R. L., & Poland, J. A. (2015). Genetic mapping of race-specific stem rust resistance in the synthetic hexaploid W7984 × Opata M85 mapping population. Crop Science, 55(6), 2580. DOI:10.2135/cropsci2014.11.0755


Tack, J., Barkley, A., Rife, T. W., Poland, J. A., & Nalley, L. L. (2015). Quantifying variety-specific heat resistance and the potential for adaptation to climate change. Global Change Biology. DOI:10.1111/gcb.13163


Edae, E. A., Bowden, R. L., & Poland, J. (2015). Application of population sequencing (POPSEQ) for ordering and imputing genotyping-by-sequencing markers in hexaploid wheat. G3: Genes|Genomes|Genetics DOI:10.1534/g3.115.020362


Tiwari, V. K., Wang, S., Danilova, T., Koo, D. H., Vrána, J., Kubaláková, M., Hribova, E., Rawat, N., Kalia, B., Singh, N., Friebe, B., Doležel, J., Akhunov, E., Poland, J., Sabir, J. S. M., & Gill, B. S. (2015) Exploring the Tertiary Gene Pool of Bread Wheat: Sequence assembly and analysis of chromosome 5Mg of aegilops geniculata The Plant Journal  DOI:10.1111/tpj.13036


Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L., & Sorrells, M. E. (2015) Genetic Gain from phenotypic and genomic selection for quantitativeresistance to stem rust of wheat. The Plant Genome 8(2) DOI:10.3835/plantgenome2014.10.0074


Rife, T. W., Wu, S., Bowden, R. L., & Poland, J. A. (2015) Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling.  BMC Genomics 16(1): 248 DOI:10.1186/s12864-015-1404-9


Hulse-Kemp, A. M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D. D., Frelichowski, J., Giband, M., Hague, S., Hinze, L. L., Kochan, K. J., Riggs, P. K., Scheffler, J. A., Udall, J. A., Ulloa, M., Wang, S. S., Zhu, Q.-H., Bag, S. K., Bhardwaj, A., Burke, J. J., Byers, R. L., Claverie, M., Gore, M. A., Harker, D. B., Islam, M. S., Jenkins, J. N., Jones, D. C., Lacape, J.-M., Llewellyn, D. J., Percy, R. G., Pepper, A. E., Poland, J. A., Mohan Rai, K., Sawant, S. V., Singh, S. K., Spriggs, A., Taylor, J. M., Wang, F., Yourstone, S. M., Zheng, X., Lawley, C. T., Ganal, M. W., Van Deynze, A., Wilson, I. W., & Stelly, D. M. (2015) Development of a 63K SNP array for cotton and high-density mapping of intra- and inter-specific populations of Gossypium spp G3: Genes|Genomes|Genetics DOI: 10.1534/g3.115.018416


Juliana, P., Rutkoski, J. E., Poland, J. A., Singh, R. P., Murugasamy, S., Natesan, S., Barbier, H., & Sorrells, M. E. (2015)  Genome-wide association mapping for leaf tip necrosis and pseudo-black chaff in relation to durable rust resistance in wheat The Plant Genome DOI:10.3835/plantgenome2015.01.0002


Talukder, S. K., Vara Prasad, P. V., Todd, T., Babar, M. A., Poland, J., Bowden, R., & Fritz, A. (2015). Effect of cytoplasmic diversity on post anthesis heat tolerance in wheat. Euphytica 204(2), 383–394. http://doi.org/10.1007/s10681-014-1350-7


Poland, J. (2015) Breeding assisted genomics. Current Opinion in Plant Biology 24,119–124 DOI:10.1016/j.pbi.2015.02.009


Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L., & Sorrells, M. E. (2015) Efficient use of historical data for genomic selection: A case study of stem rust resistance in wheat. The Plant Genome DOI: 10.3835/plantgenome2014.09.0046


Benson, J. M., Poland, J. A., Benson, B. M., Stromberg, E. L., & Nelson, R. J. ((2015). Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis. PLoS Genet 11 (3): e1005045. DOI: 10.1371/journal.pgen.1005045


Mora, F., Castillo, D., Lado, B., Matus, I., Poland, J., Belzile, F., von Zitzewitz, J., & del Pozo, A. (2015) Genome-wide association mapping of agronomic traits and carbon isotope discrimination in a worldwide germplasm collection of spring wheat using SNP markers. Molecular Breeding 35, 1-12 DOI:10.1007/s11032-015-0264-y


Isidro, J., Jannink, J.-L., Akdemir, D., Poland, J., Heslot, N., & Sorrells, M. E. (2015)  Training set optimization under population structure in genomic selection.  Theoretical and Applied Genetics 128(1): 145-158  DOI: 10.1007/s00122-014-2418-4


Lopez-Cruz, M., Crossa, J., Bonnett, D., Dreisigacker, S., Poland, J., Jannink, J.-L., Singh, R. P., Autrique, E., & de los Campos, G. (2015) Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model. G3:Genes|Genomes|Genetics 5(4) DOI: 10.1534/g3.114.016097


Chapman, J. A., Mascher, M., Buluç, A., Barry, K., Georganas, E., Session, A., Strnadova, V., Jenkins, J., Sehgal, S., Oliker, L., & Schmutz, J. (2015)  A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.  Genome biology 16(1): 26 DOI:10.1186/s13059-015-0582-8


Li, G., Wang, Y., Chen, M.-S., Edae, E., Poland, J., Akhunov, E., Chao, S., Bai, G., Carver, B. F., & Yan, L. (2015)  Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing.  BMC Genomics 16(1): 108 DOI:10.1186/s12864-015-1297-7


Kumssa, T. T., Baenziger, P. S., Rouse, M. N., Guttieri, M., Dweikat, I., Brown-Guedira, G., Williamson, S., Graybosch, R. A., Wegulo, S. N., Lorenz, A. J., & Poland, J. (2015)  Characterization of stem rust resistance in wheat cultivar gage.  Crop Sci. 55(1): 229-239 DOI:10.2135/cropsci2014.05.0348

 


 2014


Talukder, S. K., Babar, M. A., Vijayalakshmi, K., Poland, J., Prasad, P. V. V., & Bowden, R. (2014). Mapping QTL for the traits associated with heat tolerance in wheat (Triticum aestivum L.) BMC Genetics 15, 97


Tinker, N. A., Chao, S., Lazo, G. R., Oliver, R. E., Huang, Y.-F., Poland, J. A., Jellen, E. N., Maughan, P. J., Kilian, A., & Jackson, E. W. (2014) A SNP genotyping array for hexaploid oat. The Plant Genome 7:3 DOI:10.3835/plantgenome2014.03.0010


Rutkoski, J. E., Poland, J. A., Singh, R. P., Huerta-Espino, J., Bhavani, S., Barbier, H., Rouse, M. N., Jannink, J.-L., & Sorrells, M. E. (2015) Genomic Selection for Quantitative Adult Plant stem rust resistance in wheat.The Plant Genome 7(3) DOI: 10.3835/plantgenome2014.02.0


Huang, Y.-F., Poland, J. A., Wight, C. P., Jackson, E. W., & Tinker, N. A. (2014) "Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat." PLoS ONE 9(7): e102448.


The International Wheat Genome Sequencing Consortium (IWGSC), T.I.W.G.S.C. (2014) Ancient hybridizations among the ancestral genomes of bread wheat. Science 345:6194 DOI: 10.1126/science.1250092


The International Wheat Genome Sequencing Consortium (IWGSC), T.I.W.G.S.C. (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345:6194 DOI: 10.1126/science.1250092


Jamann, T. M., Poland, J. A., Kolkman, J. M., Smith, L. G., & Nelson, R. J. (2014) Unraveling genomic complexity at a quantitative disease resistance locus in maize. Genetics 198, 333-344 DOI: 10.1534/genetics.114.167486


Baenziger, P. S., Graybosch, R. A., Regassa, T., Klein, R. N., Kruger, G. R., Santra, D. K., Xu, L., Rose, D. J., Wegulo, S. N., Jin, Y., Kolmer, J., Hein, G. L., Chen, M.-S., Bai, G., Bowden, R. L., & Poland, J. (2014) Registration of ‘NE06545’ (Husker Genetics brand Freeman) hard red winter wheat. Journal of Plant Registrations 8, 279-284 DOI:10.3198/jpr2014.02.0009crc


Rife, T. W., & Poland, J. (2014) Field Book: An open-source application for field data collection on Android. Crop Science 54, 1624-1627 DOI: 10.2135/cropsci2013.08.0579


Gore, M. A., Fang, D. D., Poland, J. A., Zhang, J., Percy, R. G., Cantrell, R. G., Thyssen, G., & Lipka, A. E. (2014) Linkage map construction and quantitative trait locus analysis of agronomic and fiber quality traits in cotton The Plant Genome 7:1 DOI:10.3835/plantgenome2013.07.0023


Liu, H., Bayer, M., Druka, A., Russell, J. R., Hackett, C. A., Poland, J., Ramsay, L., Hedley, P. E., & Waugh, R. (2014) An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15:104 DOI:10.1186/1471-2164-15-104 


Kono, T. J. Y., Seth, K., Poland, J. A., & Morrell, P. L. (2014). "SNPMeta: SNP annotation and SNP metadata collection without a reference genome." Molecular Ecology Resources 14(2): 419-425. 

 


2013


Lado, B., Matus, I., Rodriquez, A., Inostroza, L., Poland, J., Belize, F., Pozo, A.D., Quince, M., & Zitzewitz, J.V. (2013) Increased genomic prediction accuracy through spatial adjustment of field trial data. G3 3:12, 2105-2114  DOI: 10.1534/g3.113.007807


Mascher, M., Wu, S., St Amand, P., Stein, N., & Poland, J. (2013) Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley.  PLoS ONE 8(10): e76925. DOI: 10.1371/journal.pone.0076925


Mascher, M., Muehlbauer, G.J., Rokhsar, D.S., Chapman, J., Schmutz, J., Barry, K., Muñoz-Amatriaín, M., Close, T.J., Wise, R.P., Schulman, A.H., Himmelhoch, A., Mayer, K.F.X., Scholz, U., Poland, J.A., Stein, N.A., & Waugh, R. (2013)  Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).  The Plant Journal DOI: 10.1111/tpj.12319


Dawson, J. C., Endelman, J.B., Helot, N., Crossa, J., Poland, J., Dreisigacker, S., Manès, Y., Sorrells, M.E., & Jeannine, J.-L.  (2013) The use of unbalanced historical data for genomic selection in an international wheat breeding program.  Field Crops Research DOI: 10.1016/j.fcr.2013.07.020


Heslot, N., Rutkoski, J., Poland, J., Jannik, J.-L., & Sorrells, M.E. (2013)  Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity.  PLoS ONE 8(9): e74612.


Rutkoski, J.E., Poland, J., Jannink, J.-L., &Sorrells, M.E. (2013)  Imputation of unordered markers and the impact on genomic selection accuracy. G3: Genes Genomes Genetics 3(3): 427-439.


Olson, E.L., Rouse, M.N., Humphrey, M.O., Bowden, R.L., Gill, B.S., & Poland, J. (2013) Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat. Theoretical and Applied Genetics: 3–10. DOI: 10.1007/s00122-013-2148-z


Olson, E.L., Rouse, M.N., Pumphrey, M.O.,Bowden, R.L., Gill, B.S., & Poland, J. (2013) Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheatTheoretical and Applied Genetics DOI: 10.1007/s00122-013-2045-5

 


 2012


International Barley Sequencing Consortium (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491,711–716


Poland, J.A., & Rife, T.W. (2012) Genotyping-by-pequencing for plant breeding and genetics. The Plant Genome 5:92–102. DOI: 10.3835/plantgenome2012.05.0005


Poland, J., Endelman, J., Dawson, J., Rutkoski, J., Wu, S., Manes, Y., Dreisigacker, S., Crossa, J., Sánchez-Villeda, H., Sorrells, M., & Jeannine, J.-L. (2012) Genomic selection in wheat breeding using genotyping-by-sequencing. The Plant Genome 5:103. DOI: 10.3835/plantgenome2012.06.0006


Poland, J.A., Brown, P.J., Sorrels, M.E., & Jeannine, J.-L. (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PloS ONE 7:e32253

-Protocol

-Datasets:

Oregon Wolfe Barley DH: SNPs , Tags (dominant markers)

Synthetic x Opata DH: SNPs , Tags (dominant markers)

 


 2011


Poland, J., Bradbury, P., Buckler, E., & Nelson, R. (2011) Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. PNAS 108:6893-6898. DOI: 10.1073/pnas.1010894108


Elshire, R.J., Glaubitz, J.C., Sun, Q., Poland, J.A., Kawamoto, K., Buckler, E.S., & Mitchell, S.E. (2011)  A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6:e19379 


Poland, J., & Nelson, R. (2011)  In the eye of the beholder: The effects of rater variability and different rating scales on QTL mapping. Phytopathology 101:290-298


Poland, J., Zeid, M., Belay, G., Sorrells, M.E., & Mulkey, S. (2011)  QTL mapping for yield and lodging resistance in an enhanced SSR-based map for tef Theoretical and Applied Genetics122(1). DOI: 10.1007/s00122-010-1424-4


Poland, J., Chung, C., Kump, K., Benson, J., Longfellow, J., Walsh, E., Balint-Kurti, P., & Nelson, R. (2011)  Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize. Theoretical and Applied Genetics 123(2) 10.1007/s00122-011-1585-9


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