*Data sets available on request. 



Belamkar, V., Guttieri, M. J., Hussain, W., Jarquín, D., El-Basyoni, I., Poland, J., Lorenz, A. J., & Baenziger, P. S. (2018). Genomic Selection in Preliminary Yield Trials in a Winter Wheat Breeding Program. G3 (Bethesda, Md.), g3.200415.2018.

Brunazzi, A., Scaglione, D., Talini, R. F., Miculan, M., Magni, F., Poland, J., Enrico Pè, M., Brandolini, A., & Dell’Acqua, M. (2018). Molecular diversity and landscape genomics of the crop wild relative Triticum urartu across the Fertile Crescent. The Plant Journal, 94(4), 670–684.

Danilova, T. V., Friebe, B., Gill, B. S., Poland, J., & Jackson, E. (2018). Development of a complete set of wheat–barley group-7 Robertsonian translocation chromosomes conferring an increased content of β-glucan. Theoretical and Applied Genetics, 131(2), 377–388.

DeHaan, L., Christians, M., Crain, J., & Poland, J. (2018). Development and Evolution of an Intermediate Wheatgrass Domestication Program. Sustainability, 10(5), 1499.

Eltaher, S., Sallam, A., Belamkar, V., Emara, H. A., Nower, A. A., Salem, K. F. M., Poland, J., & Baenziger, P. S. (2018). Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing. Frontiers in Genetics, 9, 76.

Hussain, W., Guttieri, M. J., Belamkar, V., Poland, J., Sallam, A., & Baenziger, P. S. (2018). Registration of a Bread Wheat Recombinant Inbred Line Mapping Population Derived from a Cross Between ‘Harry’ and ‘Wesley.’ Journal of Plant Registrations, 0(0), 0.

Juliana, P., Singh, R. P., Singh, P. K., Poland, J. A., Bergstrom, G. C., Huerta espino, J., Bhavani, S., Crossa, J., & Sorrells, M. E. (2018). Genome wide association mapping for resistance to leaf rust, stripe rust and tan spot in wheat reveals potential candidate genes. Theoretical and Applied Genetics, 131, 1405–1422.

Mourad, A. M. I., Sallam, A., Belamkar, V., Wegulo, S., Bowden, R., Jin, Y., Mahdy, E., Bakheit, B., El-Wafaa, A. A., Poland, J., & Baenziger, P. S. (2018). Genome-Wide Association Study for Identification and Validation of Novel SNP Markers for Sr6 Stem Rust Resistance Gene in Bread Wheat. Frontiers in Plant Science, 9, 380.

Shao, M., Bai, G., Rife, T. W., Poland, J., Lin, M., Liu, S., Chen, H., Kumssa, T., Fritz, A., Trick, H., Li, Y., & Zhang, G. (2018). QTL mapping of pre-harvest sprouting resistance in a white wheat cultivar Danby. Theoretical and Applied Genetics, 1–15.

Wang, X., Singh, D., Marla, S., Morris, G., & Poland, J. (2018). Field-based high-throughput phenotyping of plant height in sorghum using different sensing technologies. Plant Methods, 14(1), 53. 

Arora, S., Steuernagel, B., Chandramohan, S., Long, Y., Matny, O., Johnson, R., Enk, J., Periyannan, S., Hatta, M. A. M., Athiyannan, N., Cheema, J., Yu, G., Kangara, N., Ghosh, S., Szabo, L. J., Poland, J., Bariana, H., Jones, J. D. G., Bentley, A. R., Ayliffe, M., Olson, E., Xu, S. S., Steffenson, B. J., Lagudah, E., & Wulff, B. B. H. (2018). Resistance gene discovery and cloning by sequence capture and association genetics. bioRxiv, 248146.

Crain, J., Mondal, S., Rutkoski, J., Singh, R. P., & Poland, J. (2018). Combining High-Throughput Phenotyping and Genomic Information to Increase Prediction and Selection Accuracy in Wheat Breeding. The Plant Genome, 11(1), 0.

Danilova, T. V, Friebe, B., Gill, B. S., Poland, J., & Jackson, E. (2018). Chromosome Rearrangements Caused by Double Monosomy in Wheat-Barley Group-7 Substitution Lines. Cytogenetic and Genome Research, (0).

Elbasyoni, I., Lorenz, A. J., Guttieri, M., Frels, K., Baenziger, P. S., Poland, J., & Akhunov, E. (2018). A Comparison Between Genotyping-by-sequencing and Array-based Scoring of SNPs for Genomic Prediction Accuracy in Winter Wheat. Plant Science.

Wiersma, A. T., Whetten, R. B., Zhang, G., Sehgal, S. K., Kolb, F. L., Poland, J. A., Mason, R. E., Carter, A. H., Cowger, C., & Olson, E. L. (2018). Registration of Two Wheat Germplasm Lines Fixed for Journal of Plant Registrations, 0(0), 0.



Zhang, X., Larson, S. R., Gao, L., Teh, S. L., DeHaan, L. R., Fraser, M., Sallam, A., Kantarski, T., Frels, K., Poland, J., Wyse, D., & Anderson, J. A. (2017). Uncovering the Genetic Architecture of Seed Weight and Size in Intermediate Wheatgrass through Linkage and Association Mapping. The Plant Genome. doi:10.3835/plantgenome2017.03.0022

Mideros, S., Chung, C., Wiesner-Hanks, T., Poland, J. Wu, D., Fialko, A., Turgeon, B., & Nelson, R. (2017). Determinants of Virulence and In-Vitro Development Colocalize on a Genetic Map 2 of Setosphaeria turcica. Phytopathology.

Crain, J., Reynolds, M., & Poland, J. (2017). Utilizing High-Throughput Phenotypic Data for Improved Phenotypic Selection of Stress-Adaptive Traits in Wheat. Crop Science, 57(2), 648–659.

Beier, S., Himmelbach, A., Colmsee, C., Zhang, X.-Q., Barrero, R. A., Zhang, Q., Li, L., Bayer, M., Bolser, D., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Sampath, D., Heavens, D., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Langridge, P., Muehlbauer, G. J., Kersey, P., Clark, M. D., Caccamo, M., Schulman, A. H., Platzer, M., Close, T. J., Hansson, M., Zhang, G., Braumann, I., Li, C., Waugh, R., Scholz, U., Stein, N., & Mascher, M. (2017). Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data, 4(170044).

Lado, B., Battenfield, S., Guzmán, C., Quincke, M., Singh, R. P., Dreisigacker, S., Peña, R. J., Fritz, A., Silva, P., Poland, J., & Gutiérrez, L. (2017). Strategies for Selecting Crosses Using Genomic Prediction in Two Wheat Breeding Programs. The Plant Genome, 10(2), 0.

Haghighattalab, A., Crain, J., Mondal, S., Rutkoski, J., Singh, R. P., & Poland, J. (2017). Application of geographically weighted regression to improve grain yield prediction from unmanned aerial system imagery. Crop Science.

Jarquín, D., Lemes da Silva, C., Gaynor, R. C., Poland, J., Fritz, A., Howard, R., Battenfield, S., & Crossa, J. (2017). Increasing genomic-enabled prediction accuracy by modeling genotype × environment interactions in Kansas wheat. The Plant Genome.

Pérez-Arora, S., Singh, N., Kaur, S., Bains, N. S., Uauy, C., Poland, J., & Chhuneja, P. (2017). Genome-Wide Association Study of Grain Architecture in Wild Wheat Aegilops tauschii. Frontiers in Plant Science, 8(886).

Pérez-Rodríguez, P., Crossa, J., Rutkoski, J., Poland, J., Singh, R., Legarra, A., Autrique, E., Campos, G. de los, Burgueño, J., & Dreisigacker, S. (2017). Single-step genomic and pedigree genotype × environment interaction models for predicting wheat lines in international environments. The Plant Genome. DOI:10.3835/plantgenome2016.09.0089

Mascher, M., Gundlach, H., Himmelbach, A., Beier, S., Twardziok, S. O., Wicker, T., Radchuk, V., Dockter, C., Hedley, P. E., Russell, J., Bayer, M., Ramsay, L., Liu, H., Haberer, G., Zhang, X.-Q., Zhang, Q., Barrero, R. A., Li, L., Taudien, S., Groth, M., Felder, M., Hastie, A., Šimková, H., Staňková, H., Vrána, J., Chan, S., Muñoz-Amatriaín, M., Ounit, R., Wanamaker, S., Bolser, D., Colmsee, C., Schmutzer, T., Aliyeva-Schnorr, L., Grasso, S., Tanskanen, J., Chailyan, A., Sampath, D., Heavens, D., Clissold, L., Cao, S., Chapman, B., Dai, F., Han, Y., Li, H., Li, X., Lin, C., McCooke, J. K., Tan, C., Wang, P., Wang, S., Yin, S., Zhou, G., Poland, J. A., Bellgard, M. I., Borisjuk, L., Houben, A., Doležel, J., Ayling, S., Lonardi, S., Kersey, P., Langridge, P., Muehlbauer, G. J., Clark, M. D., Caccamo, M., Schulman, A. H., Mayer, K. F. X., Platzer, M., Close, T. J., Scholz, U., Hansson, M., Zhang, G., Braumann, I., Spannagl, M., Li, C., Waugh, R., & Stein, N. (2017). A chromosome conformation capture ordered sequence of the barley genomeNature, 544(7651), 427–433. DOI:10.1038/nature22043

Sun, J. Rutkoski, J., Poland, J., Crossa, J., Jannink, J., and Sorrels, M. (2017). Multitrait, random regression, or simple repeatability model in high-throughput phenotyping data improve genomic prediction for wheat grain yeild. The Plant Genome, 10(2). DOI:10.3835/plantgenome2016.11.0111

Moore, J., Manmathan, H., Anderson, V., Poland, J., Morris, C. and Haley, S. (2017). Improving genomic prediction for pre-harvest sprouting tolerance in wheat by weighting large-effect quantitative trait loci. Crop Science, 57, 1-10.  DOI:10.2135/cropsci2016.06.0453

Juliana, P., Singh, R., Singh, P., Crossa, J., Rutkoski, J., Poland, J., Bergstrom, G. and Sorrells, M. (2017). Comparison of models and whole-genome profiling approaches for genomic-enabled prediction of septoria tritici blotch, stagonospora nodorum blotch, and tan spot resistance in wheatThe Plant Genome, 10(2).  DOI:10.3835/plantgenome2016.08.0082 

Juliana, P., Singh, R., Singh, P., Crossa, J., Huerta-Espino, J., Lan, C., Bhavani, S., Rutkoski, J., Poland, J., Bergsrom, G. and Sorrells, M. (2017). Genomic and pedigree-based prediction for leaf, stem, and stripe rust resistance in wheat. Theoretial and Applied Genetics. DOI:10.1007/s00122-017-2897-1

Dunckel, S., J. Crossa, S. Wu, D. Bonnett, and Poland, J. (2017). Genomic selection for increased yield in synthetic-derived wheat. Crop Science, 57, 713-725. DOI:10.2135/cropsci2016.04.0209

Tanger, P., Klassen, S., Mojica, J. P., Lovell, J. T., Moyers, B. T., Baraoidan, M., Naredo, M., McNally, K., Poland, J., Bush, D. and McKay, J. K. (2017). Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice. Scientific Reports. 

Kantarski, T., Larson, S., Zhang, X., DeHaan, L., Borevitz, J., Anderson, J. and Poland, J. (2017). Development of the first consensus genetic map of intermediate wheatgrass gives insight into the genome and tools for molecular breeding.  Theoretical Applied Genetics, 130(137). DOI:10.1007/s00122-016-2799-7



Tack, J., Barkley, A., Rife, T. W., Poland, J. A., & Nalley, L. L. (2016). Quantifying variety-specific heat resistance and the potential for adaptation to climate change. Global Change Biology, 22(8), 2904–2912.

Wang, X., Thorp, K. R., White, J. W., French, A. N., & Poland, J. A. (2016). Approaches for geospatial processing of field-based high-throughput plant phenomics data from ground vehicle platforms. Transactions of the ASABE, 59(5), 1053–1067.

Barker, J., Zhang, N., Sharon, J., Steeves, R., Wang, X., Wei, Y., & Poland, J. (2016). Development of a field-based high-throughput mobile phenotyping platform. Computers and Electronics in Agriculture, 122, 74–85.

Battenfield, S. D., Guzmán, C., Gaynor, R. C., Singh, R. P., Peña, R. J., Dreisigacker, S., Allan, F. K., & Poland, J. A. (2016). Genomic selection for processing and end-use quality traits in the CIMMYT spring bread wheat breeding program. The Plant Genome, 9 (2).

Chaffin, A. S., Huang, Y.-F., Smith, S., Bekele, W. A., Babiker, E., Gnanesh, B. N., Foresman, B. J., Blanchard, S. G., Jay, J. J., Reid, R. W., Wight, C. P., Chao, S., Oliver, R., Islamovic, E., Kolb, F. L., McCartney, C., Mitchell Fetch, J. W., Beattie, A. D., Bjørnstad, Å., Bonman, J. M., Langdon, T., Howarth, C. J., Brouwer, C. R., Jellen, E. N., Klos, K. E., Poland, J. A., Hsieh, T.-F., Brown, R., Jackson, E., Schlueter, J. A., & Tinker, N. A. (2016). A consensus map in cultivated hexaploid oat reveals conserved grass synteny with substantial subgenome rearrangement. The Plant Genome, 9 (2).

Crain, J. L., Wei, Y., Barker, J., Thompson, S. M., Alderman, P. D., Reynolds, M., Zhang, N., & Poland, J. (2016). Development and deployment of a portable field phenotyping platform. Crop Science, 56 (3), 965.

Haghighattalab, A., González Pérez, L., Mondal, S., Singh, D., Schinstock, D., Rutkoski, J., Ortiz-Monasterio, I., Singh, R. P., Goodin, D. & Poland, J. (2016). Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries. Plant Methods, 12 (1), 35.

Pauli, D., Chapman, S., Bart, R., Topp, C., Lawrence-Dill, C., Poland, J., & Gore, M. (2016). The quest for understanding phenotypic variation via integrated approaches in the field environment. Plant Physiology, 172 (2). http:/​/​dx.​doi.​org/​10.​1104/​pp.​16.​00592

Poland, J., & Rutkoski, J. (2016). Advances and challenges in genomic selection for disease resistance. Annual Review of Phytopathology, 54 (1), 79–98.

Rutkoski, J., Poland, J., Mondal, S., Autrique, E., Gonzalez Parez, L., Crossa, J., Reynolds, M. &  Singh, R. (2016). Canopy temperature and vegetation indices from high-throughput phenotyping improve accuracy of pedigree and genomic selection for grain yield in wheat. G3: Genes, Genomes, Genetics, 6 (9).

Wiersma, A. T., Brown, L. K., Brisco, E. I., Liu, T. L., Childs, K. L., Poland, J. A., Sehgal, S. K. & Olson, E. L. (2016). Fine mapping of the stem rust resistance gene SrTA10187. Theoretical and Applied Genetics, 1 (10).

Guzman, C., Peña, R. J., Singh, R., Autrique, E., Dreisigacker, S., Crossa, J., Rutkoski, J., Poland, J., & Battenfield, S. (2016). Wheat quality improvement at CIMMYT and the use of genomic selection on it. Applied & Translational Genomics,

Kantarski, T., Larson, S., Zhang, X., DeHaan, L., Borevitz, J., Anderson, J., & Poland, J. (2016). Development of the first consensus genetic map of intermediate wheatgrass (Thinopyrum intermedium) using genotyping-by-sequencing. Theoretical and Applied Genetics, 1 (14). DOI: 10.1007/s00122-016-2799-7

Xiao, X., Ohm, H. W., Hunt, G. J., Poland, J. A., Kong, L., Nemacheck, J. A., & Williams, C. E. (2016). Genotyping-by-sequencing to remap QTL for type II Fusarium head blight and leaf rust resistance in a wheat–tall wheatgrass introgression recombinant inbred population. Molecular Breeding, 36(4), 51. DOI:10.1007/s11032-016-0472-0

McCallum, S., Graham, J., Jorgensen, L., Rowland, L. J., Bassil, N. V., Hancock, J. F., Wheeler, E. J., Vining, K., Poland, J. A., Olmstead, J. W., Buck, E., Wiedow, C., Jackson, E., Brown, A., & Hackett, C. A. (2016). Construction of a SNP and SSR linkage map in autotetraploid blueberry using genotyping by sequencing. Molecular Breeding, 36(4), 41. DOI:10.1007/s11032-016-0443-5

Tiwari, V. K., Heesacker, A., Riera-Lizarazu, O., Gunn, H., Wang, S., Wang, Y., Gu, Y. Q., Paux, E., Koo, D.-H., Kumar, A., Luo, M.-C., Lazo, G., Zemetra, R., Akhunov, E., Friebe, B., Poland, J., Gill, B. S., Kianian, S., & Leonard, J. M. ((2016). A whole-genome, radiation hybrid mapping resource of hexaploid wheat. The Plant Journal, 86(2), 195-207. DOI:

Zhang, X., Sallam, A., Gao, L., Kantarski, T., Poland, J., DeHaan, L. R., Wyse, D. L., & Anderson, J. A. (2016). Establishment and optimization of genomic selection to accelerate the domestication and improvement of intermediate wheatgrass. The Plant Genome, 9(1), 0. DOI:

Sun, J., Ohm, H. W., Poland, J. A., & Williams, C. E. (2016). Mapping four quantitative trait loci associated with type I fusarium head blight resistance in winter wheat “INW0412.” Crop Science, 56(3), 1163-1172. DOI:

DeHaan, L. R., Van Tassel, D. L., Anderson, J. A., Asselin, S. R., Barnes, R., Baute, G. J., Cattani, D. J., Culman, S. W., Dorn, K. M., Hulke, B. S., Kantar, M., Larson, S., Marks, M. D., Miller, A. J., Poland, J., Ravetta, D. A., Rude, E., Ryan, M. R., Wyse, D., & Zhang, X. (2015). A pipeline strategy for grain crop domestication. Crop Science, 56(3),917-930, 10.2135/cropsci2015.06.0356. DOI:



Dunckel, S. M., Olson, E. L., Rouse, M. N., Bowden, R. L., & Poland, J. A. (2015). Genetic mapping of race-specific stem rust resistance in the synthetic hexaploid W7984 × Opata M85 mapping population. Crop Science, 55(6), 2580. DOI:10.2135/cropsci2014.11.0755

Tack, J., Barkley, A., Rife, T. W., Poland, J. A., & Nalley, L. L. (2015). Quantifying variety-specific heat resistance and the potential for adaptation to climate change. Global Change Biology. DOI:10.1111/gcb.13163

Edae, E. A., Bowden, R. L., & Poland, J. (2015). Application of population sequencing (POPSEQ) for ordering and imputing genotyping-by-sequencing markers in hexaploid wheat. G3: Genes|Genomes|Genetics DOI:10.1534/g3.115.020362

Tiwari, V. K., Wang, S., Danilova, T., Koo, D. H., Vrána, J., Kubaláková, M., Hribova, E., Rawat, N., Kalia, B., Singh, N., Friebe, B., Doležel, J., Akhunov, E., Poland, J., Sabir, J. S. M., & Gill, B. S. (2015) Exploring the Tertiary Gene Pool of Bread Wheat: Sequence assembly and analysis of chromosome 5Mg of aegilops geniculata The Plant Journal  DOI:10.1111/tpj.13036

Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L., & Sorrells, M. E. (2015) Genetic Gain from phenotypic and genomic selection for quantitativeresistance to stem rust of wheat. The Plant Genome 8(2) DOI:10.3835/plantgenome2014.10.0074

Rife, T. W., Wu, S., Bowden, R. L., & Poland, J. A. (2015) Spiked GBS: a unified, open platform for single marker genotyping and whole-genome profiling.  BMC Genomics 16(1): 248 DOI:10.1186/s12864-015-1404-9

Hulse-Kemp, A. M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D. D., Frelichowski, J., Giband, M., Hague, S., Hinze, L. L., Kochan, K. J., Riggs, P. K., Scheffler, J. A., Udall, J. A., Ulloa, M., Wang, S. S., Zhu, Q.-H., Bag, S. K., Bhardwaj, A., Burke, J. J., Byers, R. L., Claverie, M., Gore, M. A., Harker, D. B., Islam, M. S., Jenkins, J. N., Jones, D. C., Lacape, J.-M., Llewellyn, D. J., Percy, R. G., Pepper, A. E., Poland, J. A., Mohan Rai, K., Sawant, S. V., Singh, S. K., Spriggs, A., Taylor, J. M., Wang, F., Yourstone, S. M., Zheng, X., Lawley, C. T., Ganal, M. W., Van Deynze, A., Wilson, I. W., & Stelly, D. M. (2015) Development of a 63K SNP array for cotton and high-density mapping of intra- and inter-specific populations of Gossypium spp G3: Genes|Genomes|Genetics DOI: 10.1534/g3.115.018416

Juliana, P., Rutkoski, J. E., Poland, J. A., Singh, R. P., Murugasamy, S., Natesan, S., Barbier, H., & Sorrells, M. E. (2015)  Genome-wide association mapping for leaf tip necrosis and pseudo-black chaff in relation to durable rust resistance in wheat The Plant Genome DOI:10.3835/plantgenome2015.01.0002

Talukder, S. K., Vara Prasad, P. V., Todd, T., Babar, M. A., Poland, J., Bowden, R., & Fritz, A. (2015). Effect of cytoplasmic diversity on post anthesis heat tolerance in wheat. Euphytica 204(2), 383–394.

Poland, J. (2015) Breeding assisted genomics. Current Opinion in Plant Biology 24,119–124 DOI:10.1016/j.pbi.2015.02.009

Rutkoski, J., Singh, R. P., Huerta-Espino, J., Bhavani, S., Poland, J., Jannink, J. L., & Sorrells, M. E. (2015) Efficient use of historical data for genomic selection: A case study of stem rust resistance in wheat. The Plant Genome DOI: 10.3835/plantgenome2014.09.0046

Benson, J. M., Poland, J. A., Benson, B. M., Stromberg, E. L., & Nelson, R. J. ((2015). Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis. PLoS Genet 11 (3): e1005045. DOI: 10.1371/journal.pgen.1005045

Mora, F., Castillo, D., Lado, B., Matus, I., Poland, J., Belzile, F., von Zitzewitz, J., & del Pozo, A. (2015) Genome-wide association mapping of agronomic traits and carbon isotope discrimination in a worldwide germplasm collection of spring wheat using SNP markers. Molecular Breeding 35, 1-12 DOI:10.1007/s11032-015-0264-y

Isidro, J., Jannink, J.-L., Akdemir, D., Poland, J., Heslot, N., & Sorrells, M. E. (2015)  Training set optimization under population structure in genomic selection.  Theoretical and Applied Genetics 128(1): 145-158  DOI: 10.1007/s00122-014-2418-4

Lopez-Cruz, M., Crossa, J., Bonnett, D., Dreisigacker, S., Poland, J., Jannink, J.-L., Singh, R. P., Autrique, E., & de los Campos, G. (2015) Increased prediction accuracy in wheat breeding trials using a marker × environment interaction genomic selection model. G3:Genes|Genomes|Genetics 5(4) DOI: 10.1534/g3.114.016097

Chapman, J. A., Mascher, M., Buluç, A., Barry, K., Georganas, E., Session, A., Strnadova, V., Jenkins, J., Sehgal, S., Oliker, L., & Schmutz, J. (2015)  A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.  Genome biology 16(1): 26 DOI:10.1186/s13059-015-0582-8

Li, G., Wang, Y., Chen, M.-S., Edae, E., Poland, J., Akhunov, E., Chao, S., Bai, G., Carver, B. F., & Yan, L. (2015)  Precisely mapping a major gene conferring resistance to Hessian fly in bread wheat using genotyping-by-sequencing.  BMC Genomics 16(1): 108 DOI:10.1186/s12864-015-1297-7

Kumssa, T. T., Baenziger, P. S., Rouse, M. N., Guttieri, M., Dweikat, I., Brown-Guedira, G., Williamson, S., Graybosch, R. A., Wegulo, S. N., Lorenz, A. J., & Poland, J. (2015)  Characterization of stem rust resistance in wheat cultivar gage.  Crop Sci. 55(1): 229-239 DOI:10.2135/cropsci2014.05.0348



Talukder, S. K., Babar, M. A., Vijayalakshmi, K., Poland, J., Prasad, P. V. V., & Bowden, R. (2014). Mapping QTL for the traits associated with heat tolerance in wheat (Triticum aestivum L.) BMC Genetics 15, 97

Tinker, N. A., Chao, S., Lazo, G. R., Oliver, R. E., Huang, Y.-F., Poland, J. A., Jellen, E. N., Maughan, P. J., Kilian, A., & Jackson, E. W. (2014) A SNP genotyping array for hexaploid oat. The Plant Genome 7:3 DOI:10.3835/plantgenome2014.03.0010

Rutkoski, J. E., Poland, J. A., Singh, R. P., Huerta-Espino, J., Bhavani, S., Barbier, H., Rouse, M. N., Jannink, J.-L., & Sorrells, M. E. (2015) Genomic Selection for Quantitative Adult Plant stem rust resistance in wheat.The Plant Genome 7(3) DOI: 10.3835/plantgenome2014.02.0

Huang, Y.-F., Poland, J. A., Wight, C. P., Jackson, E. W., & Tinker, N. A. (2014) "Using genotyping-by-sequencing (GBS) for genomic discovery in cultivated oat." PLoS ONE 9(7): e102448.

The International Wheat Genome Sequencing Consortium (IWGSC), T.I.W.G.S.C. (2014) Ancient hybridizations among the ancestral genomes of bread wheat. Science 345:6194 DOI: 10.1126/science.1250092

The International Wheat Genome Sequencing Consortium (IWGSC), T.I.W.G.S.C. (2014) A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 345:6194 DOI: 10.1126/science.1250092

Jamann, T. M., Poland, J. A., Kolkman, J. M., Smith, L. G., & Nelson, R. J. (2014) Unraveling genomic complexity at a quantitative disease resistance locus in maize. Genetics 198, 333-344 DOI: 10.1534/genetics.114.167486

Baenziger, P. S., Graybosch, R. A., Regassa, T., Klein, R. N., Kruger, G. R., Santra, D. K., Xu, L., Rose, D. J., Wegulo, S. N., Jin, Y., Kolmer, J., Hein, G. L., Chen, M.-S., Bai, G., Bowden, R. L., & Poland, J. (2014) Registration of ‘NE06545’ (Husker Genetics brand Freeman) hard red winter wheat. Journal of Plant Registrations 8, 279-284 DOI:10.3198/jpr2014.02.0009crc

Rife, T. W., & Poland, J. (2014) Field Book: An open-source application for field data collection on Android. Crop Science 54, 1624-1627 DOI: 10.2135/cropsci2013.08.0579

Gore, M. A., Fang, D. D., Poland, J. A., Zhang, J., Percy, R. G., Cantrell, R. G., Thyssen, G., & Lipka, A. E. (2014) Linkage map construction and quantitative trait locus analysis of agronomic and fiber quality traits in cotton The Plant Genome 7:1 DOI:10.3835/plantgenome2013.07.0023

Liu, H., Bayer, M., Druka, A., Russell, J. R., Hackett, C. A., Poland, J., Ramsay, L., Hedley, P. E., & Waugh, R. (2014) An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15:104 DOI:10.1186/1471-2164-15-104 

Kono, T. J. Y., Seth, K., Poland, J. A., & Morrell, P. L. (2014). "SNPMeta: SNP annotation and SNP metadata collection without a reference genome." Molecular Ecology Resources 14(2): 419-425. 



Lado, B., Matus, I., Rodriquez, A., Inostroza, L., Poland, J., Belize, F., Pozo, A.D., Quince, M., & Zitzewitz, J.V. (2013) Increased genomic prediction accuracy through spatial adjustment of field trial data. G3 3:12, 2105-2114  DOI: 10.1534/g3.113.007807

Mascher, M., Wu, S., St Amand, P., Stein, N., & Poland, J. (2013) Application of genotyping-by-sequencing on semiconductor sequencing platforms: A comparison of genetic and reference-based marker ordering in barley.  PLoS ONE 8(10): e76925. DOI: 10.1371/journal.pone.0076925

Mascher, M., Muehlbauer, G.J., Rokhsar, D.S., Chapman, J., Schmutz, J., Barry, K., Muñoz-Amatriaín, M., Close, T.J., Wise, R.P., Schulman, A.H., Himmelhoch, A., Mayer, K.F.X., Scholz, U., Poland, J.A., Stein, N.A., & Waugh, R. (2013)  Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ).  The Plant Journal DOI: 10.1111/tpj.12319

Dawson, J. C., Endelman, J.B., Helot, N., Crossa, J., Poland, J., Dreisigacker, S., Manès, Y., Sorrells, M.E., & Jeannine, J.-L.  (2013) The use of unbalanced historical data for genomic selection in an international wheat breeding program.  Field Crops Research DOI: 10.1016/j.fcr.2013.07.020

Heslot, N., Rutkoski, J., Poland, J., Jannik, J.-L., & Sorrells, M.E. (2013)  Impact of marker ascertainment bias on genomic selection accuracy and estimates of genetic diversity.  PLoS ONE 8(9): e74612.

Rutkoski, J.E., Poland, J., Jannink, J.-L., &Sorrells, M.E. (2013)  Imputation of unordered markers and the impact on genomic selection accuracy. G3: Genes Genomes Genetics 3(3): 427-439.

Olson, E.L., Rouse, M.N., Humphrey, M.O., Bowden, R.L., Gill, B.S., & Poland, J. (2013) Introgression of stem rust resistance genes SrTA10187 and SrTA10171 from Aegilops tauschii to wheat. Theoretical and Applied Genetics: 3–10. DOI: 10.1007/s00122-013-2148-z

Olson, E.L., Rouse, M.N., Pumphrey, M.O.,Bowden, R.L., Gill, B.S., & Poland, J. (2013) Simultaneous transfer, introgression, and genomic localization of genes for resistance to stem rust race TTKSK (Ug99) from Aegilops tauschii to wheatTheoretical and Applied Genetics DOI: 10.1007/s00122-013-2045-5



International Barley Sequencing Consortium (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature 491,711–716

Poland, J.A., & Rife, T.W. (2012) Genotyping-by-pequencing for plant breeding and genetics. The Plant Genome 5:92–102. DOI: 10.3835/plantgenome2012.05.0005

Poland, J., Endelman, J., Dawson, J., Rutkoski, J., Wu, S., Manes, Y., Dreisigacker, S., Crossa, J., Sánchez-Villeda, H., Sorrells, M., & Jeannine, J.-L. (2012) Genomic selection in wheat breeding using genotyping-by-sequencing. The Plant Genome 5:103. DOI: 10.3835/plantgenome2012.06.0006

Poland, J.A., Brown, P.J., Sorrels, M.E., & Jeannine, J.-L. (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PloS ONE 7:e32253



Oregon Wolfe Barley DH: SNPs , Tags (dominant markers)

Synthetic x Opata DH: SNPs , Tags (dominant markers)



Poland, J., Bradbury, P., Buckler, E., & Nelson, R. (2011) Genome-wide nested association mapping of quantitative resistance to northern leaf blight in maize. PNAS 108:6893-6898. DOI: 10.1073/pnas.1010894108

Elshire, R.J., Glaubitz, J.C., Sun, Q., Poland, J.A., Kawamoto, K., Buckler, E.S., & Mitchell, S.E. (2011)  A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6:e19379 

Poland, J., & Nelson, R. (2011)  In the eye of the beholder: The effects of rater variability and different rating scales on QTL mapping. Phytopathology 101:290-298

Poland, J., Zeid, M., Belay, G., Sorrells, M.E., & Mulkey, S. (2011)  QTL mapping for yield and lodging resistance in an enhanced SSR-based map for tef Theoretical and Applied Genetics122(1). DOI: 10.1007/s00122-010-1424-4

Poland, J., Chung, C., Kump, K., Benson, J., Longfellow, J., Walsh, E., Balint-Kurti, P., & Nelson, R. (2011)  Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize. Theoretical and Applied Genetics 123(2) 10.1007/s00122-011-1585-9